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Allen Brain Cell Atlas - Data Access

INTRODUCTION

Getting started
Accessing 10x RNA-seq gene expression data

DATA

Mouse whole-brain transcriptomic cell type atlas (Hongkui Zeng)
A molecularly defined and spatially resolved cell atlas of the whole mouse brain (Xiaowei Zhuang)
Human whole-brain transcriptomic cell type atlas (Kimberly Siletti)

NOTEBOOKS

Mouse whole-brain transcriptomic cell type atlas (Hongkui Zeng)
A molecularly defined and spatially resolved cell atlas of the whole mouse brain (Xiaowei Zhuang)
- MERFISH whole mouse brain spatial transcriptomics (Xiaowei Zhuang)
Whole Human Brain 10x scRNA-seq gene expression data

ADDITIONAL RESOURCES

Resource Pages

Repository
Open issue

.md

Cluster annotations

Cluster annotations#

WMB-taxonomy (CCN20230504)
WMB-taxonomy (CCN20230722)
WHB-taxonomy

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Gene lists

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Parcellation annotations

By Allen Institute

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