Skip to main content

Ctrl+K

Allen Brain Cell Atlas - Data Access

INTRODUCTION

Getting started
Accessing 10x RNA-seq gene expression data
Using cells selected in the ABC Atlas with Gene Expression data.

DATA

Mouse whole-brain transcriptomic cell type atlas (Hongkui Zeng)
A molecularly defined and spatially resolved cell atlas of the whole mouse brain (Xiaowei Zhuang)
Human whole-brain transcriptomic cell type atlas (Kimberly Siletti)

NOTEBOOKS

Mouse whole-brain transcriptomic cell type atlas (Hongkui Zeng)
A molecularly defined and spatially resolved cell atlas of the whole mouse brain (Xiaowei Zhuang)
- MERFISH whole mouse brain spatial transcriptomics (Xiaowei Zhuang)
Whole Human Brain 10x scRNA-seq gene expression data

ADDITIONAL RESOURCES

Resource Pages

Repository
Open issue

.md

Cluster annotations

Cluster annotations#

WMB-taxonomy (CCN20230504)
WMB-taxonomy (CCN20230722)
WHB-taxonomy

previous

Gene lists

next

Parcellation annotations

By Allen Institute

© Copyright 2023.