MERFISH whole brain spatial transcriptomics#

  • Part 1: learn about the MERFISH dataset through some example use cases and visualization for a single brain section. [notebooks/merfish_tutorial_part_1.ipynb]

  • Part 2a: learn to access data and prepare for whole brain example use cases in part 2b. [notebooks/merfish_tutorial_part_2a.ipynb]

  • Part 2b: explore the whole brain data through visualization and analyses of a set of genes of interest. [notebooks/merfish_tutorial_part_2b.ipynb]