MERFISH whole brain spatial transcriptomics

• Part 1: learn about the MERFISH dataset through some example use cases and visualization for a single brain section. [notebooks/merfish_tutorial_part_1.ipynb]

• Part 2a: learn to access data and prepare for whole brain example use cases in part 2b. [notebooks/merfish_tutorial_part_2a.ipynb]

• Part 2b: explore the whole brain data through visualization and analyses of a set of genes of interest. [notebooks/merfish_tutorial_part_2b.ipynb]

• Imputed Genes: explore the whole brain, imputed gene data through visualization, analyses of a set of genes of interest, and comparison to the measured genes. [notebooks/merfish_imputed_genes_example.ipynb]