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Allen Brain Cell Atlas - Data Access

INTRODUCTION

Getting started
Accessing 10x RNA-seq gene expression data
Using cells selected in the ABC Atlas with Gene Expression data.

DATA

Mouse whole-brain transcriptomic cell type atlas (Hongkui Zeng)
A molecularly defined and spatially resolved cell atlas of the whole mouse brain (Xiaowei Zhuang)
Human whole-brain transcriptomic cell type atlas (Kimberly Siletti)

NOTEBOOKS

Mouse whole-brain transcriptomic cell type atlas (Hongkui Zeng)
A molecularly defined and spatially resolved cell atlas of the whole mouse brain (Xiaowei Zhuang)
- MERFISH whole mouse brain spatial transcriptomics (Xiaowei Zhuang)
Whole Human Brain 10x scRNA-seq gene expression data

ADDITIONAL RESOURCES

Resource Pages

Repository
Open issue

.md

Resource Pages

Resource Pages#

Gene lists
Cluster annotation terms
Parcellation annotation terms

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Whole Human Brain 10x RNA-seq gene expression data (part 2)

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Gene lists

By Allen Institute

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