ASAP Human Postmortem-Derived Brain Sequencing Collection (ASAP-PMDBS) Notebooks#

  • Data Overview: Learn about the ASAP-PMDBS harmonized, single cell dataset including disease indicators and UMAP. [notebooks/asap_pmdbs_data_and_metadata.ipynb]

  • Mapping to the Whole Human Brain Taxonomy: Explore the mapping of the ASAP-PMDBS cells to the Siletti, Whole Human Brain (WHB) taxonomy produced by MapMyCells. [notebooks/asap_pmdbs_siletti_taxonomy.ipynb]

  • Mapping to the SEA-AD: Explore the mapping of the ASAP-PMDBS cells to the SEA-AD, Whole Human Brain taxonomy produced by MapMyCells. [notebooks/asap_pmdbs_seaad_taxonomy.ipynb]

  • 10X Gene Expression: Learn how to extract gene expression data for specific genes and visualize them in a UMAP. [notebooks/asap_pmdbs_gene_expression.ipynb]