bmtk.simulator.pointnet.modules package¶

Submodules¶

bmtk.simulator.pointnet.modules.ecephys_module module¶

class bmtk.simulator.pointnet.modules.ecephys_module.PointECEphysUnitsModule(name, **kwargs)[source]¶

Bases: ECEphysUnitsModule

initialize(sim)[source]¶

Will be called once at the beginning of the simulation run, after the network and simulation parameters have all been finalized.

Parameters:: sim – Simulation object

bmtk.simulator.pointnet.modules.ecephys_module.set_spikes(node_id, nest_obj, spike_trains)¶

bmtk.simulator.pointnet.modules.ecephys_module.set_spikes_nest2(node_id, nest_obj, spike_trains)[source]¶

bmtk.simulator.pointnet.modules.ecephys_module.set_spikes_nest3(node_id, nest_obj, spike_trains)[source]¶

bmtk.simulator.pointnet.modules.iclamp module¶

class bmtk.simulator.pointnet.modules.iclamp.IClampMod(input_type, **mod_args)[source]¶

Bases: IClampMod

initialize(sim)[source]¶: Creates a NEST current clamp (eg step-generator) and attaches it to the given cells.

bmtk.simulator.pointnet.modules.multimeter_reporter module¶

class bmtk.simulator.pointnet.modules.multimeter_reporter.MultimeterMod(tmp_dir, file_name, variable_name, cells, tstart=None, tstop=None, interval=None, to_h5=True, delete_dat=True, **opt_params)[source]¶

Bases: object

finalize(sim)[source]¶

initialize(sim)[source]¶

bmtk.simulator.pointnet.modules.multimeter_reporter.create_multimeter(tstart, tstop, variable_name, label)¶

bmtk.simulator.pointnet.modules.multimeter_reporter.create_multimeter_nest2(tstart, tstop, variable_name, label)[source]¶

bmtk.simulator.pointnet.modules.multimeter_reporter.create_multimeter_nest3(tstart, tstop, variable_name, label)[source]¶

bmtk.simulator.pointnet.modules.multimeter_reporter.read_dat(dat_file, variable_name)¶

bmtk.simulator.pointnet.modules.multimeter_reporter.read_dat_nest2(dat_file, variable_name)[source]¶

bmtk.simulator.pointnet.modules.multimeter_reporter.read_dat_nest3(dat_file, variable_name)[source]¶

bmtk.simulator.pointnet.modules.record_spikes module¶

class bmtk.simulator.pointnet.modules.record_spikes.SpikesMod(tmp_dir, spikes_file_csv=None, spikes_file=None, spikes_file_nwb=None, spikes_sort_order=None, cache_to_disk=True, compression='gzip')[source]¶