bmtk.simulator.pointnet package¶
Subpackages¶
- bmtk.simulator.pointnet.default_setters package
- bmtk.simulator.pointnet.modules package
Submodules¶
bmtk.simulator.pointnet.config module¶
- class bmtk.simulator.pointnet.config.Config(dict_obj)[source]¶
Bases:
SimulationConfig
- property io¶
bmtk.simulator.pointnet.gids module¶
- class bmtk.simulator.pointnet.gids.GidPool[source]¶
Bases:
object
- property gids¶
- property populations¶
- class bmtk.simulator.pointnet.gids.PopulationID(node_id, population)¶
Bases:
tuple
- node_id¶
Alias for field number 0
- population¶
Alias for field number 1
- bmtk.simulator.pointnet.gids.ids2list(nest_ids)¶
bmtk.simulator.pointnet.glif_utils module¶
- bmtk.simulator.pointnet.glif_utils.convert_aibs2nest(model_template, dynamics_params)¶
- bmtk.simulator.pointnet.glif_utils.lif_aibs_converter(config, tau_syn=[5.5, 8.5, 2.8, 5.8])[source]¶
- Parameters:
config –
- Returns:
- bmtk.simulator.pointnet.glif_utils.lif_asc_aibs_converter(config, tau_syn=[5.5, 8.5, 2.8, 5.8])[source]¶
- Parameters:
config –
- Returns:
- bmtk.simulator.pointnet.glif_utils.lif_asc_psc_aibs_converter(config, syn_tau=[5.5, 8.5, 2.8, 5.8])[source]¶
Creates a nest glif_lif_asc_psc object
- bmtk.simulator.pointnet.glif_utils.lif_psc_aibs_converter(config, syn_tau=[5.5, 8.5, 2.8, 5.8])[source]¶
Creates a nest glif_lif_psc object
- bmtk.simulator.pointnet.glif_utils.lif_r_aibs_converter(config)[source]¶
- Parameters:
config –
- Returns:
- bmtk.simulator.pointnet.glif_utils.lif_r_asc_a_aibs_converter(config)[source]¶
Creates a nest glif_lif_r_asc_a object
- bmtk.simulator.pointnet.glif_utils.lif_r_asc_a_psc_aibs_converter(config, syn_tau=[5.5, 8.5, 2.8, 5.8])[source]¶
Creates a nest glif_lif_r_asc_a_psc object
- bmtk.simulator.pointnet.glif_utils.lif_r_asc_aibs_converter(config)[source]¶
Creates a nest glif_lif_r_asc object
bmtk.simulator.pointnet.io_tools module¶
Functions for logging, writing and reading from file.
bmtk.simulator.pointnet.nest_utils module¶
- bmtk.simulator.pointnet.nest_utils.get_version()[source]¶
Trys to get NEST version major, minor, and patch (optional) of the current running version of nest. Will return as a list of ints [major, minor, patch], although patch may be None.
- Returns:
[major, minor, patch] if able to parse version, None if fails. ‘patch’ may be None value.
bmtk.simulator.pointnet.pointnetwork module¶
- class bmtk.simulator.pointnet.pointnetwork.PointNetwork(**properties)[source]¶
Bases:
SimNetwork
- property gid_map¶
- property gid_pool¶
- property py_function_caches¶
- bmtk.simulator.pointnet.pointnetwork.set_spikes(node_id, nest_obj, spike_trains)¶
bmtk.simulator.pointnet.pointsimulator module¶
bmtk.simulator.pointnet.property_map module¶
- class bmtk.simulator.pointnet.property_map.EdgePropertyMap(graph, source_population, target_population)[source]¶
Bases:
object
bmtk.simulator.pointnet.pyfunction_cache module¶
bmtk.simulator.pointnet.sonata_adaptors module¶
- class bmtk.simulator.pointnet.sonata_adaptors.PointEdge(sonata_edge, edge_adaptor)[source]¶
Bases:
SonataBaseEdge
- property nest_params¶
- property source_node_ids¶
- property target_node_ids¶
- class bmtk.simulator.pointnet.sonata_adaptors.PointEdgeAdaptor(network)[source]¶
Bases:
EdgeAdaptor
- property batch_process¶
- class bmtk.simulator.pointnet.sonata_adaptors.PointEdgeBatched(source_nids, target_nids, nest_params)[source]¶
Bases:
object
- property nest_params¶
- property source_node_ids¶
- property target_node_ids¶
- class bmtk.simulator.pointnet.sonata_adaptors.PointNode(node, prop_adaptor)[source]¶
Bases:
SonataBaseNode
- property gids¶
- property n_nodes¶
- property nest_ids¶
- property nest_model¶
- property nest_params¶
- property node_ids¶
- class bmtk.simulator.pointnet.sonata_adaptors.PointNodeAdaptor(network)[source]¶
Bases:
NodeAdaptor
- property batch_process¶
- class bmtk.simulator.pointnet.sonata_adaptors.PointNodeBatched(node_ids, gids, node_types_table, node_type_id)[source]¶
Bases:
object
- property gids¶
- property model_type¶
- property n_nodes¶
- property nest_ids¶
- property nest_model¶
- property nest_params¶
- property node_ids¶
bmtk.simulator.pointnet.utils module¶
- bmtk.simulator.pointnet.utils.load_conns(cnn_fn)[source]¶
load information regarding connectivity from csv files
- Parameters:
- cnn_fn: json file name for connection information
- Returns:
- connection dictionary
- bmtk.simulator.pointnet.utils.load_params(node_name, model_name)[source]¶
load information regarding nodes and cell_models from csv files
- Parameters:
- node_name: json file name for node information
- model_name: json file name for neuron model information
- Returns:
- node_info: 2d array of node info read out from the json file
- mode_info: 2d array of model info read out from the json file
- dict_coordinates: dictionary of coordinates. keyword is the node_id and entries are the x,y and z coordinates.