bmtk.utils.reports package#
Subpackages#
- bmtk.utils.reports.compartment package
- Submodules
- bmtk.utils.reports.compartment.compartment_reader module
CompartmentReaderVer01
CompartmentReaderVer01.custom_columns()
CompartmentReaderVer01.data()
CompartmentReaderVer01.default_population
CompartmentReaderVer01.dt()
CompartmentReaderVer01.element_ids()
CompartmentReaderVer01.element_pos()
CompartmentReaderVer01.get_column()
CompartmentReaderVer01.get_node_description()
CompartmentReaderVer01.get_population()
CompartmentReaderVer01.get_report_description()
CompartmentReaderVer01.n_elements()
CompartmentReaderVer01.node_ids()
CompartmentReaderVer01.populations
CompartmentReaderVer01.time_trace()
CompartmentReaderVer01.tstart()
CompartmentReaderVer01.tstop()
CompartmentReaderVer01.units()
CompartmentReaderVer01.variable()
- bmtk.utils.reports.compartment.compartment_report module
- bmtk.utils.reports.compartment.compartment_writer module
CompartmentWriterv01
CompartmentWriterv01.add_cell()
CompartmentWriterv01.close()
CompartmentWriterv01.flush()
CompartmentWriterv01.initialize()
CompartmentWriterv01.merge()
CompartmentWriterv01.n_steps()
CompartmentWriterv01.record_cell()
CompartmentWriterv01.record_cell_block()
CompartmentWriterv01.report_group
CompartmentWriterv01.set_dt()
CompartmentWriterv01.set_time_trace()
CompartmentWriterv01.set_tstart()
CompartmentWriterv01.set_tstop()
CompartmentWriterv01.set_units()
CompartmentWriterv01.set_variable()
CompartmentWriterv01.temp_files
PopulationWriterv01
PopulationWriterv01.DataTable
PopulationWriterv01.add_cell()
PopulationWriterv01.close()
PopulationWriterv01.dt()
PopulationWriterv01.flush()
PopulationWriterv01.h5_base
PopulationWriterv01.initialize()
PopulationWriterv01.merge()
PopulationWriterv01.n_steps()
PopulationWriterv01.record_cell()
PopulationWriterv01.record_cell_block()
PopulationWriterv01.set_dt()
PopulationWriterv01.set_time_trace()
PopulationWriterv01.set_tstart()
PopulationWriterv01.set_tstop()
PopulationWriterv01.set_units()
PopulationWriterv01.set_variable()
PopulationWriterv01.time_trace()
PopulationWriterv01.tstart()
PopulationWriterv01.tstop()
PopulationWriterv01.units()
PopulationWriterv01.variable()
barrier()
- bmtk.utils.reports.compartment.core module
CompartmentReaderABC
CompartmentReaderABC.custom_columns()
CompartmentReaderABC.data()
CompartmentReaderABC.dt()
CompartmentReaderABC.element_ids()
CompartmentReaderABC.element_pos()
CompartmentReaderABC.get_column()
CompartmentReaderABC.get_node_description()
CompartmentReaderABC.get_population()
CompartmentReaderABC.get_report_description()
CompartmentReaderABC.index()
CompartmentReaderABC.n_elements()
CompartmentReaderABC.n_steps()
CompartmentReaderABC.node_ids()
CompartmentReaderABC.populations
CompartmentReaderABC.time_trace()
CompartmentReaderABC.tstart()
CompartmentReaderABC.tstop()
CompartmentReaderABC.units()
CompartmentReaderABC.validate_file()
CompartmentReaderABC.variable()
CompartmentWriterABC
CompartmentWriterABC.add_cell()
CompartmentWriterABC.close()
CompartmentWriterABC.flush()
CompartmentWriterABC.initialize()
CompartmentWriterABC.merge()
CompartmentWriterABC.record_cell()
CompartmentWriterABC.record_cell_block()
CompartmentWriterABC.set_dt()
CompartmentWriterABC.set_time_trace()
CompartmentWriterABC.set_tstart()
CompartmentWriterABC.set_tstop()
CompartmentWriterABC.set_units()
CompartmentWriterABC.set_variable()
- bmtk.utils.reports.compartment.plotting module
- Module contents
- bmtk.utils.reports.spike_trains package
- Submodules
- bmtk.utils.reports.spike_trains.core module
- bmtk.utils.reports.spike_trains.plotting module
- bmtk.utils.reports.spike_trains.spike_train_buffer module
STCSVBuffer
STCSVMPIBuffer
STCSVMPIBufferV2
STMPIBuffer
STMemoryBuffer
STMemoryBuffer.add_spike()
STMemoryBuffer.add_spikes()
STMemoryBuffer.close()
STMemoryBuffer.flush()
STMemoryBuffer.get_times()
STMemoryBuffer.import_spikes()
STMemoryBuffer.n_spikes()
STMemoryBuffer.node_ids()
STMemoryBuffer.populations
STMemoryBuffer.set_units()
STMemoryBuffer.spikes()
STMemoryBuffer.to_dataframe()
STMemoryBuffer.units()
- bmtk.utils.reports.spike_trains.spike_train_readers module
- bmtk.utils.reports.spike_trains.spike_trains module
- bmtk.utils.reports.spike_trains.spike_trains_api module
SpikeTrainsAPI
SpikeTrainsAPI.add_spike()
SpikeTrainsAPI.add_spikes()
SpikeTrainsAPI.close()
SpikeTrainsAPI.flush()
SpikeTrainsAPI.get_times()
SpikeTrainsAPI.import_spikes()
SpikeTrainsAPI.is_equal()
SpikeTrainsAPI.is_subset()
SpikeTrainsAPI.merge()
SpikeTrainsAPI.n_spikes()
SpikeTrainsAPI.node_ids()
SpikeTrainsAPI.populations
SpikeTrainsAPI.set_units()
SpikeTrainsAPI.sort_order()
SpikeTrainsAPI.spikes()
SpikeTrainsAPI.to_csv()
SpikeTrainsAPI.to_dataframe()
SpikeTrainsAPI.to_nwb()
SpikeTrainsAPI.to_sonata()
SpikeTrainsAPI.units()
SpikeTrainsReadOnlyAPI
- bmtk.utils.reports.spike_trains.spikes_file_writers module
- bmtk.utils.reports.spike_trains.stats module
- Module contents
Submodules#
bmtk.utils.reports.current_writer module#
- class bmtk.utils.reports.current_writer.CurrentWriterv01(file_name, num_currents, units=None, tstart=0.0, tstop=1.0, dt=0.01, n_steps=None, buffer_size=0, buffer_data=True, **kwargs)[source]#
Bases:
object
Used to save current currents to the described hdf5 format.
- class DataTable[source]#
Bases:
object
A small struct to keep track of different data (and buffer) tables