bmtk.utils.create_environment package¶
Submodules¶
bmtk.utils.create_environment.create_environment module¶
- bmtk.utils.create_environment.create_environment.create_environment(simulator, base_dir='.', network_dir=None, components_dir=None, node_sets_file=None, output_dir=None, overwrite=False, run_script=True, config_file=None, config_name=None, split_configs=False, network_filter=None, report_vars=[], report_nodes=None, spikes_inputs=None, rates_inputs=None, clamp_reports=[], current_clamp=None, file_current_clamp=None, se_voltage_clamp=None, tstart=0.0, tstop=1000.0, dt=0.001, dL=20.0, spikes_threshold=-15.0, nsteps_block=5000, v_init=-80.0, celsius=34.0, compile_mechanisms=False, use_relative_paths=True, include_examples=False)[source]¶
- Parameters:
simulator –
base_dir –
network_dir –
components_dir –
node_sets_file –
output_dir –
overwrite –
run_script –
config_file –
config_name –
split_configs –
network_filter –
report_vars –
report_nodes –
spikes_inputs –
rates_inputs –
clamp_reports –
current_clamp –
file_current_clamp –
se_voltage_clamp –
tstart –
tstop –
dt –
dL –
spikes_threshold –
nstesp_block –
v_init –
celsius –
compile_mechanisms –
use_relative_paths –
include_examples –
bmtk.utils.create_environment.env_builder module¶
- class bmtk.utils.create_environment.env_builder.BioNetEnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]¶
Bases:
EnvBuilder
- property bmtk_simulator¶
- property examples_dir¶
- property target_simulator¶
- class bmtk.utils.create_environment.env_builder.EnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]¶
Bases:
object
- property base_dir¶
- property bmtk_simulator¶
- build(include_examples=False, use_relative_paths=True, report_vars=[], report_nodes=None, clamp_reports=[], current_clamp=None, file_current_clamp=None, se_voltage_clamp=None, network_filter=None, spikes_inputs=None, rates_inputs=None, config_file='config.json', overwrite_config=False, config_name='', split_configs=False, run_script=True, **run_args)[source]¶
- property components_dir¶
- property examples_dir¶
- property network_dir¶
- property output_dir¶
- property scripts_root¶
- property target_simulator¶
- class bmtk.utils.create_environment.env_builder.FilterNetEnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]¶
Bases:
EnvBuilder
- property bmtk_simulator¶
- property examples_dir¶
- property target_simulator¶