bmtk.utils.create_environment package#
Submodules#
bmtk.utils.create_environment.create_environment module#
- bmtk.utils.create_environment.create_environment.create_environment(simulator, base_dir='.', network_dir=None, components_dir=None, node_sets_file=None, output_dir=None, overwrite=False, run_script=True, config_file=None, config_name=None, split_configs=False, network_filter=None, report_vars=[], report_nodes=None, spikes_inputs=None, rates_inputs=None, clamp_reports=[], current_clamp=None, file_current_clamp=None, se_voltage_clamp=None, tstart=0.0, tstop=1000.0, dt=None, dL=20.0, spikes_threshold=-15.0, nsteps_block=5000, v_init=-80.0, celsius=34.0, compile_mechanisms=False, use_relative_paths=True, include_examples=False)[source]#
- Parameters:
simulator
base_dir
network_dir
components_dir
node_sets_file
output_dir
overwrite
run_script
config_file
config_name
split_configs
network_filter
report_vars
report_nodes
spikes_inputs
rates_inputs
clamp_reports
current_clamp
file_current_clamp
se_voltage_clamp
tstart
tstop
dt
dL
spikes_threshold
nstesp_block
v_init
celsius
compile_mechanisms
use_relative_paths
include_examples
bmtk.utils.create_environment.env_builder module#
- class bmtk.utils.create_environment.env_builder.BioNetEnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]#
Bases:
EnvBuilder
- property bmtk_simulator#
- property examples_dir#
- property target_simulator#
- class bmtk.utils.create_environment.env_builder.EnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]#
Bases:
object
- property base_dir#
- property bmtk_simulator#
- build(include_examples=False, use_relative_paths=True, report_vars=[], report_nodes=None, clamp_reports=[], current_clamp=None, file_current_clamp=None, se_voltage_clamp=None, network_filter=None, spikes_inputs=None, rates_inputs=None, config_file='config.json', overwrite_config=False, config_name='', split_configs=False, run_script=True, **run_args)[source]#
- property components_dir#
- property examples_dir#
- property network_dir#
- property output_dir#
- property scripts_root#
- property target_simulator#
- class bmtk.utils.create_environment.env_builder.FilterNetEnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]#
Bases:
EnvBuilder
- property bmtk_simulator#
- property examples_dir#
- property target_simulator#