bmtk.utils.create_environment package

Submodules

bmtk.utils.create_environment.create_environment module

bmtk.utils.create_environment.create_environment.create_environment(simulator, base_dir='.', network_dir=None, components_dir=None, node_sets_file=None, output_dir=None, overwrite=False, run_script=True, config_file=None, config_name=None, split_configs=False, network_filter=None, report_vars=[], report_nodes=None, spikes_inputs=None, rates_inputs=None, clamp_reports=[], current_clamp=None, file_current_clamp=None, se_voltage_clamp=None, tstart=0.0, tstop=1000.0, dt=0.001, dL=20.0, spikes_threshold=- 15.0, nsteps_block=5000, v_init=- 80.0, celsius=34.0, compile_mechanisms=False, use_relative_paths=True, include_examples=False)[source]
Parameters
  • simulator

  • base_dir

  • network_dir

  • components_dir

  • node_sets_file

  • output_dir

  • overwrite

  • run_script

  • config_file

  • config_name

  • split_configs

  • network_filter

  • report_vars

  • report_nodes

  • spikes_inputs

  • rates_inputs

  • clamp_reports

  • current_clamp

  • file_current_clamp

  • se_voltage_clamp

  • tstart

  • tstop

  • dt

  • dL

  • spikes_threshold

  • nstesp_block

  • v_init

  • celsius

  • compile_mechanisms

  • use_relative_paths

  • include_examples

bmtk.utils.create_environment.env_builder module

class bmtk.utils.create_environment.env_builder.BioNetEnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]

Bases: bmtk.utils.create_environment.env_builder.EnvBuilder

property bmtk_simulator
compile_mechanisms()[source]
property examples_dir
property target_simulator
class bmtk.utils.create_environment.env_builder.EnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]

Bases: object

property base_dir
property bmtk_simulator
build(include_examples=False, use_relative_paths=True, report_vars=[], report_nodes=None, clamp_reports=[], current_clamp=None, file_current_clamp=None, se_voltage_clamp=None, network_filter=None, spikes_inputs=None, rates_inputs=None, config_file='config.json', overwrite_config=False, config_name='', split_configs=False, run_script=True, **run_args)[source]
compile_mechanisms()[source]
property components_dir
property examples_dir
property network_dir
property output_dir
property scripts_root
property target_simulator
class bmtk.utils.create_environment.env_builder.FilterNetEnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]

Bases: bmtk.utils.create_environment.env_builder.EnvBuilder

property bmtk_simulator
property examples_dir
property target_simulator
class bmtk.utils.create_environment.env_builder.PointNetEnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]

Bases: bmtk.utils.create_environment.env_builder.EnvBuilder

property bmtk_simulator
property examples_dir
property target_simulator
class bmtk.utils.create_environment.env_builder.PopNetEnvBuilder(base_dir='.', network_dir=None, components_dir=None, output_dir=None, node_sets_file=None)[source]

Bases: bmtk.utils.create_environment.env_builder.EnvBuilder

property bmtk_simulator
property examples_dir
property target_simulator

Module contents