bmtk.simulator.popnet package

Subpackages

• bmtk.simulator.popnet.dipde package
  • Submodules
  • bmtk.simulator.popnet.dipde.popedge module
  • bmtk.simulator.popnet.dipde.popnetwork module
  • bmtk.simulator.popnet.dipde.popnode module
  • bmtk.simulator.popnet.dipde.popsimulator module
  • bmtk.simulator.popnet.dipde.sonata_adaptors module
    • PopEdgeAdaptor
      • PopEdgeAdaptor.get_edge()
    • PopNetEdge
      • PopNetEdge.syn_weight
  • bmtk.simulator.popnet.dipde.utils module
    • KeyDefaultDict
    • assert_model_known()
    • create_firing_rate_server()
    • create_instance()
    • create_nwb_server_file_path()
    • create_population_list()
    • df_to_csv()
    • get_firing_rate_from_nwb()
    • get_firing_rates()
    • get_mesoscale_connectivity_dict()
    • list_of_dicts_to_dict_of_lists()
    • network_dict_to_target_adjacency_dict()
    • population_list_to_csv()
    • population_list_to_dataframe()
    • population_to_dict_for_dataframe()
    • reorder_columns_in_frame()
  • Module contents
• bmtk.simulator.popnet.ssn package
  • Subpackages
    • bmtk.simulator.popnet.ssn.default_setters package
      • Submodules
      • bmtk.simulator.popnet.ssn.default_setters.activation_functions module
      • Module contents
    • bmtk.simulator.popnet.ssn.modules package
      • Submodules
      • bmtk.simulator.popnet.ssn.modules.external_inputs module
      • bmtk.simulator.popnet.ssn.modules.initial_states module
      • bmtk.simulator.popnet.ssn.modules.rates_recorder module
      • bmtk.simulator.popnet.ssn.modules.sim_module module
      • Module contents
  • Submodules
  • bmtk.simulator.popnet.ssn.popnetwork module
    • PopNetwork
      • PopNetwork.add_external_node()
      • PopNetwork.add_recurrent_node()
      • PopNetwork.build_edges()
      • PopNetwork.build_nodes()
      • PopNetwork.connectivity_mat
      • PopNetwork.decay_constants
      • PopNetwork.exponents
      • PopNetwork.get_node()
      • PopNetwork.get_ssn_node()
      • PopNetwork.initial_states
      • PopNetwork.n_neu_recurrent
      • PopNetwork.n_neu_total
      • PopNetwork.network_finalized
      • PopNetwork.scales
      • PopNetwork.target_simulator
  • bmtk.simulator.popnet.ssn.popnode module
    • SSNNode
      • SSNNode.get()
  • bmtk.simulator.popnet.ssn.popsimulator module
    • PopSimulator
      • PopSimulator.add_mod()
      • PopSimulator.from_config()
      • PopSimulator.nsteps
      • PopSimulator.results
      • PopSimulator.run()
      • PopSimulator.set_activation_function()
    • run_ssn()
    • step()
  • bmtk.simulator.popnet.ssn.pyfunction_cache module
    • activation_function()
    • add_activation_function()
    • add_function()
    • init_function()
    • inputs_generator()
  • bmtk.simulator.popnet.ssn.utils module
    • empty_decorator()
  • Module contents

Submodules

bmtk.simulator.popnet.config module

class bmtk.simulator.popnet.config.Config(*args, **kwargs)

Bases: SimulationConfig

bmtk.simulator.popnet.config.from_json(config_file, validate=False)

Module contents

class bmtk.simulator.popnet.PopNetwork

Bases: object

static from_config(conf, **properties)

class bmtk.simulator.popnet.PopSimulator

Bases: object

static from_config(configure, network, **properties)