allensdk.model.biophys_sim package

Submodules

allensdk.model.biophys_sim.bps_command module

allensdk.model.biophys_sim.bps_command.choose_bps_command(command='bps_simple', conf_file=None)[source]
allensdk.model.biophys_sim.bps_command.run_module(description, module_name, function_name)[source]

allensdk.model.biophys_sim.config module

class allensdk.model.biophys_sim.config.Config[source]

Bases: allensdk.config.app.application_config.ApplicationConfig

load(config_path, disable_existing_logs=False)[source]

Parse the application configuration then immediately load the model configuration files.

Parameters:

disable_existing_logs : boolean, optional

If false (default) leave existing logs after configuration.

read_model_description()[source]

parse the model_file field of the application configuration and read the files.

The model_file field of the application configuration is first split at commas, since it may list more than one file.

The files may be uris of the form file:filename?section=name, in which case a bare configuration object is read from filename into the configuration section with key ‘name’.

A simple filename without a section option is treated as a standard multi-section configuration file.

Returns:

description : Description

Configuration object.

Module contents