Models

The Allen SDK currently focuses on models generated from electrophysiology data in the Allen Cell Types Database. There are two classes of models available for download: biophysical models and generalize leaky integrate-and-fire models.

• Generalized LIF
  • Downloading GLIF Models
  • Running a GLIF Simulation
  • GLIF Configuration
  • Built-in Dynamics Rules
  • Built-in Reset Rules
• Biophysical
  • Prerequisites
  • Downloading Biophysical Models
  • Directory Structure
  • Running the Simulation (Linux shell prompt)
  • Selecting a Specific Sweep
  • Simulation Main Loop
  • Customization
  • Examples
  • Exporting Output to Text Format or Image
  • Model Description Files
    • Basic Structure
    • Objects Within Sections
    • Comment Lines
    • Split Description Files by Section
    • Split Sections Between Description Files
  • Resource Manifest
    • A Simple Manifest
    • Parent Child Relationships
    • File Spec Patterns
    • Split Manifest Files
    • Extensions
  • Further Reading