allensdk.brain_observatory.observatory_plots module

class allensdk.brain_observatory.observatory_plots.DimensionPatchHandler(vals, start_color, end_color, *args, **kwargs)

Bases: object

dim_color(index)

legend_artist(legend, orig_handle, fontsize, handlebox)

allensdk.brain_observatory.observatory_plots.figure_in_px(*args, **kwds)

allensdk.brain_observatory.observatory_plots.finalize_no_axes(pad=0.0)

allensdk.brain_observatory.observatory_plots.finalize_no_labels(pad=0.3, legend=False)

allensdk.brain_observatory.observatory_plots.finalize_with_axes(pad=0.3)

allensdk.brain_observatory.observatory_plots.float_label(n)

allensdk.brain_observatory.observatory_plots.plot_cell_correlation(sig_corrs, labels, colors, scale=15)

allensdk.brain_observatory.observatory_plots.plot_combined_speed(binned_resp_vis, binned_dx_vis, binned_resp_sp, binned_dx_sp, evoked_color, spont_color)

allensdk.brain_observatory.observatory_plots.plot_condition_histogram(vals, bins, color='#ccccdd')

allensdk.brain_observatory.observatory_plots.plot_mask_outline(mask, ax, color='k')

allensdk.brain_observatory.observatory_plots.plot_pupil_location(xy_deg, s=1, c=None, cmap=<matplotlib.colors.LinearSegmentedColormap object>, edgecolor='', include_labels=True)

allensdk.brain_observatory.observatory_plots.plot_radial_histogram(angles, counts, all_angles=None, include_labels=False, offset=180.0, direction=-1, closed=False, color='#ccccdd')

allensdk.brain_observatory.observatory_plots.plot_receptive_field(rf, color_map=None, clim=None, mask=None, outline_color='#cccccc', scalebar=True)

allensdk.brain_observatory.observatory_plots.plot_representational_similarity(rs, dims=None, dim_labels=None, colors=None, dim_order=None, labels=True)

allensdk.brain_observatory.observatory_plots.plot_selectivity_cumulative_histogram(sis, xlabel, si_range=[0, 1.5], n_hist_bins=50, color='#ccccdd')

allensdk.brain_observatory.observatory_plots.plot_speed(binned_resp, binned_dx, num_bins, color)

allensdk.brain_observatory.observatory_plots.plot_time_to_peak(msrs, ttps, t_start, t_end, stim_start, stim_end, cmap)

allensdk.brain_observatory.observatory_plots.population_correlation_scatter(sig_corrs, noise_corrs, labels, colors, scale=15)