allensdk.brain_observatory.demixer module¶
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allensdk.brain_observatory.demixer.demix_time_dep_masks(raw_traces, stack, masks)[source]¶ Parameters: - raw_traces – extracted traces
- stack – movie (same length as traces)
- masks – binary roi masks
Returns: demixed traces
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allensdk.brain_observatory.demixer.find_negative_transients_threshold(trace, window=500, length=10, std_devs=3)[source]¶
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allensdk.brain_observatory.demixer.plot_negative_baselines(raw_traces, demix_traces, mask_array, roi_ids_mask, plot_dir, ext='png')[source]¶
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allensdk.brain_observatory.demixer.plot_negative_transients(raw_traces, demix_traces, valid_roi, mask_array, roi_ids_mask, plot_dir, ext='png')[source]¶
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allensdk.brain_observatory.demixer.plot_overlap_masks_lengthOne(roi_ind, masks, savefile=None, weighted=False)[source]¶
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allensdk.brain_observatory.demixer.plot_traces(raw_trace, demix_trace, roi_id, roi_ind, save_file)[source]¶