allensdk.brain_observatory.circle_plots module

class allensdk.brain_observatory.circle_plots.CoronaPlotter(angle_start=270, plot_scale=1.2, inner_radius=0.3, *args, **kwargs)

Bases: allensdk.brain_observatory.circle_plots.PolarPlotter

infer_dims(category_data)

plot(category_data, data=None, clim=None, cmap=<matplotlib.colors.LinearSegmentedColormap object>)

set_dims(categories)

show_arrow(color=None)

class allensdk.brain_observatory.circle_plots.FanPlotter(group_scale=0.9, *args, **kwargs)

Bases: allensdk.brain_observatory.circle_plots.PolarPlotter

static for_drifting_gratings()

static for_static_gratings()

infer_dims(r_data, angle_data, group_data)

plot(r_data, angle_data, group_data=None, data=None, cmap=<matplotlib.colors.LinearSegmentedColormap object>, clim=None, rmap=None, rlim=None, axis_color=None, label_color=None)

set_dims(rs, angles, groups)

show_angle_labels(angles=None, labels=None, color=None, offset=0.05, fontdict=None)

show_axes(angles=None, radii=None, closed=False, color=None)

show_group_labels(groups=None, color=None, fontdict=None)

show_r_labels(radii=None, labels=None, color=None, offset=0.1, fontdict=None)

class allensdk.brain_observatory.circle_plots.PolarPlotter(direction=-1, angle_start=0, circle_scale=1.1, inner_radius=None, plot_center=(0.0, 0.0), plot_scale=0.9)

Bases: object

DIR_CCW = 1

DIR_CW = -1

finalize()

class allensdk.brain_observatory.circle_plots.TrackPlotter(direction=-1, angle_start=270.0, inner_radius=0.45, ring_length=None, *args, **kwargs)

Bases: allensdk.brain_observatory.circle_plots.PolarPlotter

plot(data, clim=None, cmap=<matplotlib.colors.LinearSegmentedColormap object>, mean_cmap=<matplotlib.colors.LinearSegmentedColormap object>, norm=None)

show_arrow(color=None)

allensdk.brain_observatory.circle_plots.add_angle_labels(ax, angles, labels, radius, color=None, fontdict=None, offset=0.05)

allensdk.brain_observatory.circle_plots.add_arrow(ax, radius, start_angle, end_angle, color=None, width=18.0)

allensdk.brain_observatory.circle_plots.angle_lines(angles, inner_radius, outer_radius)

allensdk.brain_observatory.circle_plots.build_hex_pack(n)

allensdk.brain_observatory.circle_plots.hex_pack(radius, n)

allensdk.brain_observatory.circle_plots.make_pincushion_plot(data, trials, on, nrows, ncols, clim=None, color_map=None, radius=None)

allensdk.brain_observatory.circle_plots.polar_line_circles(radii, theta, start_r=0)

allensdk.brain_observatory.circle_plots.polar_linspace(radius, start_angle, stop_angle, num, endpoint=False, degrees=True)

Evenly distributed list of x,y coordinates from an input range of angles and a radius in polar coordinates.

allensdk.brain_observatory.circle_plots.polar_to_xy(angles, radius)

Convert an array of angles (in radians) and a radius in polar coordinates to an array of x,y coordinates.

allensdk.brain_observatory.circle_plots.radial_arcs(rs, start_theta, end_theta)

allensdk.brain_observatory.circle_plots.radial_circles(rs)

allensdk.brain_observatory.circle_plots.reset_hex_pack()

allensdk.brain_observatory.circle_plots.rings_in_hex_pack(ct)

allensdk.brain_observatory.circle_plots.spiral_trials(radii, x=0.0, y=0.0)

allensdk.brain_observatory.circle_plots.spiral_trials_polar(r, theta, radii, offset=None)

allensdk.brain_observatory.circle_plots.wedge_ring(N, inner_radius, outer_radius, start=0, stop=360)