allensdk.api.queries.annotated_section_data_sets_api module¶

class allensdk.api.queries.annotated_section_data_sets_api.AnnotatedSectionDataSetsApi(base_uri=None)[source]¶

get_annotated_section_data_sets(structures, intensity_values=None, density_values=None, pattern_values=None, age_names=None)[source]¶

For a list of target structures, find the SectionDataSet that matches the parameters for intensity_values, density_values, pattern_values, and Age.

Parameters:	structure_graph_id : dict of integers what to retrieve intensity_values : array of strings, optional ‘High’,’Low’, ‘Medium’ (default) density_values : array of strings, optional ‘High’, ‘Low’ pattern_values : array of strings, optional ‘Full’ age_names : array of strings, options for example ‘E11.5’, ‘13.5’
Returns:	data : dict The parsed JSON repsonse message.

Notes

This method uses the non-RMA Annotated SectionDataSet endpoint.

get_annotated_section_data_sets_via_rma(**kwargs)[source]¶

For a list of target structures, find the SectionDataSet that matches the parameters for intensity_values, density_values, pattern_values, and Age.

Parameters:

structure_graph_id : dict of integers: what to retrieve
intensity_values : array of strings, optional: intensity values, ‘High’,’Low’, ‘Medium’ (default)
density_values : array of strings, optional: density values, ‘High’, ‘Low’
pattern_values : array of strings, optional: pattern values, ‘Full’
age_names : array of strings, options: for example ‘E11.5’, ‘13.5’

Returns:

Notes

This method uses the RMA endpoint to search annotated SectionDataSet data.

get_compound_annotated_section_data_sets(queries, fmt='json')[source]¶

Find the SectionDataSet that matches several annotated_section_data_sets queries linked together with a Boolean ‘and’ or ‘or’.

Parameters:	queries : array of dicts dicts with args like build_query fmt : string, optional ‘json’ or ‘xml’
Returns:	data : dict The parsed JSON repsonse message.