Source code for allensdk.api.queries.rma_template
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from .rma_api import RmaApi
from jinja2 import Template
[docs]class RmaTemplate(RmaApi):
'''
See: `Atlas Drawings and Ontologies
<http://help.brain-map.org/display/api/Atlas+Drawings+and+Ontologies>`_
'''
def __init__(self, base_uri=None, query_manifest=None):
super(RmaTemplate, self).__init__(base_uri)
self.templates = query_manifest
[docs] def to_filter_rhs(self, rhs):
if type(rhs) == list:
return ','.join(str(r) for r in rhs)
return rhs
[docs] def template_query(self, template_name, entry_name, **kwargs):
cb = self.templates[template_name]
templates = [e for e in cb if e['name'] == entry_name]
if len(templates) > 0:
template = templates[0]
else:
raise Exception('Entry %s not found.' % (entry_name))
query_args = {'model': template['model']}
if 'criteria' in template:
criteria_template = Template(template['criteria'])
if 'criteria_params' in template:
criteria_params = {key: self.to_filter_rhs(kwargs.get(key))
for key in template['criteria_params']
if key in kwargs and kwargs.get(key) is not None}
else:
criteria_params = {}
criteria_str = str(criteria_template.render(**criteria_params))
if criteria_str:
query_args['criteria'] = criteria_str
if 'include' in template:
include_template = Template(template['include'])
if 'include_params' in template:
include_params = {key: self.to_filter_rhs(kwargs.get(key))
for key in template['include_params']
if key in kwargs and kwargs.get(key) is not None}
else:
include_params = {}
include_str = str(include_template.render(**include_params))
if include_str:
query_args['include'] = include_str
if 'only' in kwargs:
if kwargs.get('only') is not None:
query_args['only'] = [self.quote_string(
','.join(kwargs.get('only')))]
elif 'only' in template:
query_args['only'] = [
self.quote_string(','.join(template['only']))]
if 'except' in kwargs:
if kwargs.get('except') is not None:
query_args['except'] = [self.quote_string(
','.join(kwargs.get('except')))]
elif 'except' in template:
query_args['except'] = template['except']
if 'start_row' in kwargs:
query_args['start_row'] = kwargs.get('start_row')
elif 'start_row' in template:
query_args['start_row'] = template['start_row']
if 'num_rows' in kwargs:
query_args['num_rows'] = kwargs.get('num_rows')
elif 'num_rows' in template:
query_args['num_rows'] = template['num_rows']
if 'count' in kwargs:
query_args['count'] = kwargs.get('count')
elif 'count' in template:
query_args['count'] = template['count']
if 'order' in kwargs:
query_args['order'] = kwargs.get('order')
elif 'order' in template:
query_args['order'] = template['order']
query_args.update(kwargs)
data = self.model_query(**query_args)
return data