References

Bridge, Matthew F, Leslie R Wilson, Sambit Panda, Korey D Stevanovic, Ayland C Letsinger, Sandra McBride, and Jesse D Cushman. 2023. “FiPhA: An Open-Source Platform for Fiber Photometry Analysis.” bioRxiv.
Bruno, Carissa A, Chris O’Brien, Svetlana Bryant, Jennifer I Mejaes, David J Estrin, Carina Pizzano, and David J Barker. 2021. “pMAT: An Open-Source Software Suite for the Analysis of Fiber Photometry Data.” Pharmacology Biochemistry and Behavior 201: 173093.
Creamer, Matthew S, Kevin S Chen, Andrew M Leifer, and Jonathan W Pillow. 2022. “Correcting Motion Induced Fluorescence Artifacts in Two-Channel Neural Imaging.” PLoS Computational Biology 18 (9): e1010421.
Grynkiewicz, Grzegorz, Martin Poenie, and Roger Y Tsien. 1985. “A New Generation of Ca2+ Indicators with Greatly Improved Fluorescence Properties.” Journal of Biological Chemistry 260 (6): 3440–50.
Helmchen, Fritjof. 2011. “Calibration Protocols for Fluorescent Calcium Indicators.” Cold Spring Harbor Protocols 2011 (8): 980–84.
Hickl co., Becker &. 2022. “Autofluorescence Spectra.” url: https://www.becker-hickl.com/applications/metabolic-imaging/#application-principles.
Islam, Md Serajul, Masato Honma, Takakazu Nakabayashi, Masataka Kinjo, and Nobuhiro Ohta. 2013. “pH Dependence of the Fluorescence Lifetime of FAD in Solution and in Cells.” International Journal of Molecular Sciences 14 (1): 1952–63.
Keevers, Luke J, Gavan P McNally, and Philip Jean-Richard-dit-Bressel. 2023. “Obtaining Artifact-Corrected Signals in Fiber Photometry: Isosbestic Signals, Robust Regression and dF/f Calculations.”
Lee, Daniel D, and H Sebastian Seung. 1999. “Learning the Parts of Objects by Non-Negative Matrix Factorization.” Nature 401 (6755): 788–91.
Ma, Ying, Mohammed A Shaik, Sharon H Kim, Mariel G Kozberg, David N Thibodeaux, Hanzhi T Zhao, Hang Yu, and Elizabeth MC Hillman. 2016. “Wide-Field Optical Mapping of Neural Activity and Brain Haemodynamics: Considerations and Novel Approaches.” Philosophical Transactions of the Royal Society B: Biological Sciences 371 (1705): 20150360.
Prahl, Scott. 1998. “Optical Spectra of Hemoglobin.” url: https://omlc.org/spectra/hemoglobin/summary.html.
Sherathiya, Venus N, Michael D Schaid, Jillian L Seiler, Gabriela C Lopez, and Talia N Lerner. 2021. “GuPPy, a Python Toolbox for the Analysis of Fiber Photometry Data.” Scientific Reports 11 (1): 24212.
Simpson, Eleanor H, Thomas Akam, Tommaso Patriarchi, Marta Blanco-Pozo, Lauren M Burgeno, Ali Mohebi, Stephanie J Cragg, and Mark E Walton. 2023. “Lights, Fiber, Action! A Primer on in Vivo Fiber Photometry.” Neuron.
Zhang, Wei-Ting, Tzu-Hao Harry Chao, Yue Yang, Tzu-Wen Wang, Sung-Ho Lee, Esteban A Oyarzabal, Jingheng Zhou, et al. 2022. “Spectral Fiber Photometry Derives Hemoglobin Concentration Changes for Accurate Measurement of Fluorescent Sensor Activity.” Cell Reports Methods 2 (7): 100243.