Package index • scrattch.mapping

All functions
`corrMap()`	Correlation based mapping
`getMappingResults(<mappingClass>,<logical>)`	Get cell type annotations
`getMappingResults(<mappingClass>,<missing>)`	Get cell type annotations
`getMappingResults()`	Get cell type annotations
`get_cl_medians()`	Compute cluster medians for each row in a matrix
`get_hierarchical_extended_results()`	This function returns names and bootstrap probabilities from all top mapped cell sets
`hierarchicalMapMyCells()`	This function maps query data against the AIT (Shiny) reference taxonomy using hierarchical mapping.
`list_mapmycells_params()`	Lists all the function parameters and their descriptions.
`map_by_cor()`	Map samples to a training dataset by correlation
`map_dend()`	Tree-based mapping
`mappingClass-class`	mappingClass S4 class definition
`mappingClass()`	Constructor function for mappingClass S4 class
`mappingMode()`	Function to set mapping mode
`resolve_cl()`	Tree-based mapping (internal)
`rfTreeMapping()`	Tree-based mapping
`seuratMap()`	Seurat based mapping
`subsampleCells()`	Function to subsample cells
`taxonomy_mapping()`	Cell type annotation and initial QC
`top_binary_genes()`	Get top genes by beta (binary) score
`treeMap()`	Tree based mapping

Reference