Fraction of cells correctly assigned — fractionCorrectWithGenes • mfishtools

This function takes as input an ordered set of marker genes (e.g., from at iterative algorithm), and returns a vector showing the fraction of cells correctly mapped.

fractionCorrectWithGenes(
  orderedGenes,
  mapDat,
  medianDat,
  clustersF,
  verbose = FALSE,
  plot = TRUE,
  return = TRUE,
  ...
)

Arguments

orderedGenes: an ordered list of input genes (e.g. from an iterative algorithm)
mapDat: normalized data of the mapping (=reference) data set.
medianDat: median value for each leaf
clustersF: cluster calls for each cell
verbose: whether or not to show progress in the function
plot: if TRUE, plotCorrectWithGenes is run
return: if TRUE, the value is returned
...: parameters passed to plotCorrectWithGenes (if plot=TRUE)

Value

a vector showing the fraction of cells correctly mapped to each cluster