Correct mapping at different tree heights

This function takes as input an ordered set of marker genes (e.g., from at iterative algorithm, and returns an table showing the fraction of cells correctly mapped to a similar cell type (as defined by the heights parameter). A height of 1 indicates correct mapping to the leaf.

buildQualityTable(
  orderedGenes,
  dend,
  mapDat,
  medianDat,
  clustersF,
  minVal = 2,
  heights = c((0:100)/100),
  verbose = FALSE
)

Arguments

orderedGenes

an ordered list of input genes (e.g. from an iterative algorithm)

dend

dendrogram for mapping.

mapDat

normalized data of the mapping (=reference) data set.

medianDat

median value for each leaf

clustersF

cluster calls for each cell

minVal

minimum number of genes to consider from the list in the mapping

heights

height in the tree to look at

verbose

whether or not to show progress in the function

Value

a matrix of fractions of cells correctly mapped for different tree heights (columns) and different gene panels (rows)