Run a single round of cross-validation of cluster mapping using a subset of marker genes — map_cv • scrattch.hicat

Run a single round of cross-validation of cluster mapping using a subset of marker genes

map_cv(
  norm.dat,
  cl,
  markers,
  n.bin = 5,
  g.perc = 1,
  method = "median",
  verbose = TRUE
)

Arguments

norm.dat: a normalized data matrix for clustered cells
cl: a cluster factor object for the cells in norm.dat
markers: a character object with the marker genes to use for cross-validation
n.bin: an integer indicating the number of bins to use
g.perc: the fraction of genes to use for validation.
method: Method for mapping. Must be either "median" (Default) or "mean".
verbose: Whether or not to display progress notifications.

Value

a named character object with the results of one round of cross-validation