Generate a matrix of pairwise DE results

Generate a matrix of pairwise DE results

get_de_matrix(de.genes, directed = FALSE, field = "num")

Arguments

de.genes

Output from de_score or de_stats_all_pairs.

directed

Logical indicating whether to select results based on all DE genes (Default, FALSE) or up/down regulated genes (see Details).

field

The result to retrieve from de.results. Either "score" or "num". Default is "num".

Value

a matrix with clusters as rows and columns, and pairwise DE results as values.

Details

When directed = TRUE and field = "num", the minimum value from up or down-regulated genes is returned for each pair. When field = "score", the minimum deScore is returned.