compute_hierarchical.RdValues accumulate from the bottom of the ontology to the top at each node, and are computed only from the values of the direct children of each node.
compute_hierarchical(df, fun, compute_column, result_column, include_node = FALSE, na.rm = NULL, taxon_column = "taxons")
| df | A flat ontology data.frame with a taxons column |
|---|---|
| fun | The function to run as a character object, e.g. "mean". |
| compute_column | The column of values to use for the function computation. |
| result_column | The name of the output column. |
| include_node | Logical, should values assigned to non-leaf nodes be included in calculation? |
| na.rm | If TRUE or FALSE, passed as a parameter to fun. If NULL (default), is ignored. |
| taxon_column | The name of the taxons column. Default is "taxons" |
A flat ontology data.frame with the result_column added. The taxon column will be moved to the last column position. This should behave similarly to mutate().
flat_ontology2 <- flat_ontology %>% compute_hierarchical("mean","n_children","mean_children", include_node = TRUE)#> Error in flat_ontology %>% compute_hierarchical("mean", "n_children", "mean_children", include_node = TRUE): could not find function "%>%"