bmtk.tests.simulator.bionet package¶
Submodules¶
bmtk.tests.simulator.bionet.bionet_virtual_files module¶
- class bmtk.tests.simulator.bionet.bionet_virtual_files.EdgeRow[source]¶
Bases:
object
- property with_dynamics_params¶
- class bmtk.tests.simulator.bionet.bionet_virtual_files.EdgesFile(target_nodes, source_nodes)[source]¶
Bases:
object
- property source_network¶
Name of network containing the source gids
- property target_network¶
Name of network containing the target gids
bmtk.tests.simulator.bionet.conftest module¶
bmtk.tests.simulator.bionet.set_cell_params module¶
- bmtk.tests.simulator.bionet.set_cell_params.Biophys1(cell_prop)[source]¶
Set parameters for cells from the Allen Cell Types database Prior to setting parameters will replace the axon with the stub
- bmtk.tests.simulator.bionet.set_cell_params.IntFire1(cell_prop)[source]¶
Set parameters for the IntFire1 cell models.
- bmtk.tests.simulator.bionet.set_cell_params.fix_axon(hobj)[source]¶
Replace reconstructed axon with a stub
- Parameters:
- hobj: instance of a Biophysical template
NEURON’s cell object
- bmtk.tests.simulator.bionet.set_cell_params.set_params_peri(hobj, params_file_name)[source]¶
Set biophysical parameters for the cell
- Parameters:
- hobj: instance of a Biophysical template
NEURON’s cell object
- params_file_name: string
name of json file containing biophysical parameters for cell’s model which determine spiking behavior