Index

A

allensdk (module) allensdk.eye_tracking (module) allensdk.eye_tracking.eye_tracking (module) allensdk.eye_tracking.feature_extraction (module) allensdk.eye_tracking.fit_ellipse (module) allensdk.eye_tracking.frame_stream (module) allensdk.eye_tracking.plotting (module)

allensdk.eye_tracking.ransac (module) allensdk.eye_tracking.utils (module) annotate_frame() (allensdk.eye_tracking.plotting.Annotator method) annotate_with_box() (in module allensdk.eye_tracking.plotting) annotate_with_cumulative() (in module allensdk.eye_tracking.plotting) annotate_with_cumulative_cr() (allensdk.eye_tracking.plotting.Annotator method) annotate_with_cumulative_pupil() (allensdk.eye_tracking.plotting.Annotator method) Annotator (class in allensdk.eye_tracking.plotting)

C

check_outliers() (in module allensdk.eye_tracking.ransac) clear_rc() (allensdk.eye_tracking.plotting.Annotator method) close() (allensdk.eye_tracking.frame_stream.CvInputStream method) (allensdk.eye_tracking.frame_stream.CvOutputStream method) (allensdk.eye_tracking.frame_stream.FrameInputStream method) (allensdk.eye_tracking.frame_stream.FrameOutputStream method) (allensdk.eye_tracking.plotting.Annotator method)

color_by_mask() (in module allensdk.eye_tracking.plotting) color_by_points() (in module allensdk.eye_tracking.plotting) COLORS (allensdk.eye_tracking.plotting.Annotator attribute) compute_density() (allensdk.eye_tracking.plotting.Annotator method) CvInputStream (class in allensdk.eye_tracking.frame_stream) CvOutputStream (class in allensdk.eye_tracking.frame_stream)

D

DEFAULT_ADAPTIVE_PUPIL (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_AVERAGE_IRIS_INTENSITY (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) default_bounding_box() (in module allensdk.eye_tracking.eye_tracking) DEFAULT_CLIP_PUPIL_VALUES (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_CR_MASK_RADIUS (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_CR_RECOLOR_SCALE_FACTOR (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_GENERATE_QC_OUTPUT (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_INDEX_LENGTH (allensdk.eye_tracking.eye_tracking.PointGenerator attribute) DEFAULT_ITERATIONS (allensdk.eye_tracking.fit_ellipse.EllipseFitter attribute) DEFAULT_MAX_ECCENTRICITY (allensdk.eye_tracking.eye_tracking.EyeTracker attribute)

DEFAULT_MAX_PUPIL_VALUE (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_MIN_PUPIL_VALUE (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_MINIMUM_POINTS_FOR_FIT (allensdk.eye_tracking.fit_ellipse.EllipseFitter attribute) DEFAULT_N_RAYS (allensdk.eye_tracking.eye_tracking.PointGenerator attribute) DEFAULT_NUMBER_OF_CLOSE_POINTS (allensdk.eye_tracking.fit_ellipse.EllipseFitter attribute) DEFAULT_PUPIL_MASK_RADIUS (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_RECOLOR_CR (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_SMOOTHING_KERNEL_SIZE (allensdk.eye_tracking.eye_tracking.EyeTracker attribute) DEFAULT_THRESHOLD (allensdk.eye_tracking.fit_ellipse.EllipseFitter attribute) DEFAULT_THRESHOLD_FACTOR (allensdk.eye_tracking.eye_tracking.PointGenerator attribute) DEFAULT_THRESHOLD_PIXELS (allensdk.eye_tracking.eye_tracking.PointGenerator attribute)

E

eccentricity() (in module allensdk.eye_tracking.fit_ellipse) ellipse_angle_of_rotation() (in module allensdk.eye_tracking.fit_ellipse) ellipse_axis_length() (in module allensdk.eye_tracking.fit_ellipse) ellipse_center() (in module allensdk.eye_tracking.fit_ellipse)

ellipse_pass_filter() (in module allensdk.eye_tracking.fit_ellipse) ellipse_perimeter_points() (in module allensdk.eye_tracking.plotting) ellipse_points() (in module allensdk.eye_tracking.plotting) EllipseFitter (class in allensdk.eye_tracking.fit_ellipse) EyeTracker (class in allensdk.eye_tracking.eye_tracking)

F

find_corneal_reflection() (allensdk.eye_tracking.eye_tracking.EyeTracker method) find_pupil() (allensdk.eye_tracking.eye_tracking.EyeTracker method) fit() (allensdk.eye_tracking.fit_ellipse.EllipseFitter method) (allensdk.eye_tracking.ransac.RansacFitter method) fit_ellipse() (in module allensdk.eye_tracking.fit_ellipse)

fit_errors() (in module allensdk.eye_tracking.fit_ellipse) fit_iteration() (in module allensdk.eye_tracking.ransac) frame_shape (allensdk.eye_tracking.frame_stream.CvInputStream attribute) (allensdk.eye_tracking.frame_stream.FrameInputStream attribute) FrameInputStream (class in allensdk.eye_tracking.frame_stream) FrameOutputStream (class in allensdk.eye_tracking.frame_stream)

G

generate_ray_indices() (in module allensdk.eye_tracking.utils) get_candidate_points() (allensdk.eye_tracking.eye_tracking.PointGenerator method) get_circle_template() (in module allensdk.eye_tracking.feature_extraction) get_filename() (in module allensdk.eye_tracking.plotting)

get_frame() (allensdk.eye_tracking.frame_stream.FrameInputStream method) get_ray_values() (in module allensdk.eye_tracking.utils) get_rgb_frame() (in module allensdk.eye_tracking.plotting) get_threshold() (allensdk.eye_tracking.eye_tracking.PointGenerator method) good_coordinate_mask() (in module allensdk.eye_tracking.utils)

I

im_shape (allensdk.eye_tracking.eye_tracking.EyeTracker attribute)

initiate_cumulative_data() (allensdk.eye_tracking.plotting.Annotator method) input_stream (allensdk.eye_tracking.eye_tracking.EyeTracker attribute)

L

load_capture_properties() (allensdk.eye_tracking.frame_stream.CvInputStream method)

M

max_correlation_positions() (in module allensdk.eye_tracking.feature_extraction)

mean_frame (allensdk.eye_tracking.eye_tracking.EyeTracker attribute)

N

next() (allensdk.eye_tracking.frame_stream.FrameInputStream method) not_on_ellipse() (in module allensdk.eye_tracking.fit_ellipse)

num_frames (allensdk.eye_tracking.frame_stream.CvInputStream attribute) (allensdk.eye_tracking.frame_stream.FrameInputStream attribute)

O

open() (allensdk.eye_tracking.frame_stream.CvInputStream method) (allensdk.eye_tracking.frame_stream.CvOutputStream method) (allensdk.eye_tracking.frame_stream.FrameInputStream method) (allensdk.eye_tracking.frame_stream.FrameOutputStream method)

P

partition_candidate_indices() (in module allensdk.eye_tracking.ransac) plot_cumulative() (in module allensdk.eye_tracking.plotting) plot_density() (in module allensdk.eye_tracking.plotting) plot_summary() (in module allensdk.eye_tracking.plotting)

plot_timeseries() (in module allensdk.eye_tracking.plotting) PointGenerator (class in allensdk.eye_tracking.eye_tracking) process_image() (allensdk.eye_tracking.eye_tracking.EyeTracker method) process_stream() (allensdk.eye_tracking.eye_tracking.EyeTracker method)

Q

quadratic_parameters() (in module allensdk.eye_tracking.fit_ellipse)

R

RansacFitter (class in allensdk.eye_tracking.ransac)

recolor_corneal_reflection() (allensdk.eye_tracking.eye_tracking.EyeTracker method) rotate_rays() (in module allensdk.eye_tracking.utils)

S

setup_pupil_finder() (allensdk.eye_tracking.eye_tracking.EyeTracker method)

T

threshold_crossing() (allensdk.eye_tracking.eye_tracking.PointGenerator method)

U

update_fit_parameters() (allensdk.eye_tracking.eye_tracking.EyeTracker method) update_last_pupil_color() (allensdk.eye_tracking.eye_tracking.EyeTracker method)

update_params() (allensdk.eye_tracking.eye_tracking.PointGenerator method) (allensdk.eye_tracking.fit_ellipse.EllipseFitter method) update_rc() (allensdk.eye_tracking.plotting.Annotator method)

W

write() (allensdk.eye_tracking.frame_stream.FrameOutputStream method)