A collection of interactive tools and prototype applications for the Seattle Alzheimer’s Disease Brain Cell Atlas (SEA-AD). These applications provide access to gene expression, cell type, trajectory, neuropathology, and annotation exploration resources.
MTG Trajectory Viewer
Identify and visualize cell type-specific gene expression changes across AD pseudo-progression in MTG.
SEA-AD Multiregion Viewer
Explore gene expression patterns in multi-region single cell data in the context of cell types, brain regions, and disease progression.
Neuropathology Viewer
Explore neuropathology images and associated measurements from multiple brain region in SEA-AD donors.
Annotation Comparison Explorer (ACE)
Compare cell type annotations between SEA-AD and ten community studies of AD or user data from MapMyCells.
Cell Hierarchy Gene Explorer (CHARGE)
Identify genes of potential biological interest in multiple cell type taxonomies (including SEA-AD MTG).
Gene Knowledge Cards
Explore patterns of gene expression in the brain across multiple Allen Brain Atlases (including SEA-AD).
Allen Brain Map Resource Finder
Visit a user-friendly entry point into tools and resources available on Allen Brain Map and SEA-AD.org.
Provide feedback
Have a suggestion for how to improve one of these tools? Please fill out this form and let us know!
Add Your Application
Have an application that you want included in the Sandbox? Either fill out this form or submit a GitHub issue with a the tool name, short description, application URL, repository URL, and an icon image and we will add it to the site!
Track Usage
Want to track app usage using Google Analytics? Click here for instructions.